HL_8XZ3_032

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XZ3_032 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1769

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8XZ3|1|A|C|1210
8XZ3|1|A|G|1211
8XZ3|1|A|U|1212
8XZ3|1|A|A|1213
8XZ3|1|A|A|1214
8XZ3|1|A|U|1215
8XZ3|1|A|A|1216
8XZ3|1|A|G|1217

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL11

Chain f

50S ribosomal protein L36