HL_8Y0U_008

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

8Y0U|1|C1|G|283, 8Y0U|1|C1|A|284, 8Y0U|1|C1|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_008 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.1853

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8Y0U|1|C1|U|278
8Y0U|1|C1|U|279
8Y0U|1|C1|U|280
8Y0U|1|C1|G|281
8Y0U|1|C1|G|282
8Y0U|1|C1|G|283
8Y0U|1|C1|A|284
8Y0U|1|C1|A|285
8Y0U|1|C1|U|286
8Y0U|1|C1|G|287

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13A

Chain LN

Large ribosomal subunit protein eL15A

Chain La

Large ribosomal subunit protein uL15

Chain Lo

Large ribosomal subunit protein eL42A