HL_8Y0U_020

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8Y0U|1|C1|U|879, 8Y0U|1|C1|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.1478

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C1|A|876
8Y0U|1|C1|C|877
8Y0U|1|C1|G|878
8Y0U|1|C1|U|879
8Y0U|1|C1|G|880
8Y0U|1|C1|C|881
8Y0U|1|C1|A|882
8Y0U|1|C1|A|883
8Y0U|1|C1|A|884
8Y0U|1|C1|U|885

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22A

Chain Lj

Large ribosomal subunit protein eL37A