HL_8Y0U_041

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8Y0U|1|C1|C|1846, 8Y0U|1|C1|G|1848, 8Y0U|1|C1|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_041 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.1011

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8Y0U|1|C1|C|1844
8Y0U|1|C1|G|1845
8Y0U|1|C1|C|1846
8Y0U|1|C1|A|1847
8Y0U|1|C1|G|1848
8Y0U|1|C1|C|1849
8Y0U|1|C1|A|1850
8Y0U|1|C1|G|1851

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4A

Chain LP

Large ribosomal subunit protein uL22A

Chain Lj

Large ribosomal subunit protein eL37A

Chain Ll

Large ribosomal subunit protein eL39