HL_8Y0U_046

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

8Y0U|1|C1|A|2138, 8Y0U|1|C1|A|2139, 8Y0U|1|C1|U|2140, 8Y0U|1|C1|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_046 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.132

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8Y0U|1|C1|U|2135
8Y0U|1|C1|C|2136
8Y0U|1|C1|U|2137
8Y0U|1|C1|A|2138
8Y0U|1|C1|A|2139
8Y0U|1|C1|U|2140
8Y0U|1|C1|U|2141
8Y0U|1|C1|A|2142
8Y0U|1|C1|A|2143
8Y0U|1|C1|A|2144
8Y0U|1|C1|A|2145

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain Lj

Large ribosomal subunit protein eL37A