HL_8Y0U_050

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8Y0U|1|C1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.119

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8Y0U|1|C1|U|2292
8Y0U|1|C1|C|2293
8Y0U|1|C1|U|2294
8Y0U|1|C1|A|2295
8Y0U|1|C1|A|2296
8Y0U|1|C1|U|2297
8Y0U|1|C1|U|2298
8Y0U|1|C1|A|2299
8Y0U|1|C1|G|2300

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LV

Large ribosomal subunit protein uL14A