HL_8Y0U_062

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_062 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.2409

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C1|C|2840
8Y0U|1|C1|G|2841
8Y0U|1|C1|U|2842
8Y0U|1|C1|U|2843
8Y0U|1|C1|C|2844
8Y0U|1|C1|A|2845
8Y0U|1|C1|U|2846
8Y0U|1|C1|A|2847
8Y0U|1|C1|G|2848

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain Lm

Ubiquitin-ribosomal protein eL40A fusion protein