HL_8Y0U_082

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

8Y0U|1|C2|C|402, 8Y0U|1|C2|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_082 not in the Motif Atlas

Homologous match to HL_8C3A_201

Geometric discrepancy: 0.1455

The information below is about HL_8C3A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8Y0U|1|C2|C|393
8Y0U|1|C2|C|394
8Y0U|1|C2|U|395
8Y0U|1|C2|G|396
8Y0U|1|C2|A|397
8Y0U|1|C2|G|398
8Y0U|1|C2|A|399
8Y0U|1|C2|A|400
8Y0U|1|C2|A|401
8Y0U|1|C2|C|402
8Y0U|1|C2|G|403
8Y0U|1|C2|G|404

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A