HL_8Y0U_090

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8Y0U|1|C2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_090 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.142

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8Y0U|1|C2|U|764
8Y0U|1|C2|G|765
8Y0U|1|C2|U|766
8Y0U|1|C2|U|767
8Y0U|1|C2|C|768
8Y0U|1|C2|A|769
8Y0U|1|C2|A|770
8Y0U|1|C2|A|771
8Y0U|1|C2|G|772

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A