HL_8Y0U_100

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8Y0U|1|C2|G|1243

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_100 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2269

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8Y0U|1|C2|A|1238
8Y0U|1|C2|U|1239
8Y0U|1|C2|U|1240
8Y0U|1|C2|G|1241
8Y0U|1|C2|A|1242
8Y0U|1|C2|G|1243
8Y0U|1|C2|A|1244
8Y0U|1|C2|G|1245
8Y0U|1|C2|C|1246
8Y0U|1|C2|U|1247

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain Sd

Small ribosomal subunit protein uS14A

Chain Sf

Ubiquitin-ribosomal protein eS31 fusion protein