HL_8Y0U_110
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8Y0U|1|C3|C|84, 8Y0U|1|C3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y0U_110 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2504
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8Y0U|1|C3|U|69
8Y0U|1|C3|G|70
8Y0U|1|C3|A|71
8Y0U|1|C3|A|72
8Y0U|1|C3|U|73
8Y0U|1|C3|U|74
8Y0U|1|C3|G|75
8Y0U|1|C3|C|76
8Y0U|1|C3|A|77
8Y0U|1|C3|G|78
8Y0U|1|C3|A|79
8Y0U|1|C3|A|80
8Y0U|1|C3|U|81
8Y0U|1|C3|U|82
8Y0U|1|C3|C|83
8Y0U|1|C3|C|84
8Y0U|1|C3|G|85
8Y0U|1|C3|U|86
8Y0U|1|C3|G|87
8Y0U|1|C3|A|88
8Y0U|1|C3|A|89
Current chains
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- Large ribosomal subunit protein uL24A
- Chain Lh
- Large ribosomal subunit protein uL29A
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Ll
- Large ribosomal subunit protein eL39
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