HL_8Y0W_108

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8Y0W|1|S2|U|1300, 8Y0W|1|S2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0W_108 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.1357

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8Y0W|1|S2|A|1295
8Y0W|1|S2|U|1296
8Y0W|1|S2|U|1297
8Y0W|1|S2|G|1298
8Y0W|1|S2|A|1299
8Y0W|1|S2|U|1300
8Y0W|1|S2|A|1301
8Y0W|1|S2|G|1302
8Y0W|1|S2|C|1303
8Y0W|1|S2|U|1304

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29