HL_8Y0X_027

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8Y0X|1|L5|U|1596, 8Y0X|1|L5|A|1600, 8Y0X|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_027 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0775

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8Y0X|1|L5|A|1593
8Y0X|1|L5|C|1594
8Y0X|1|L5|G|1595
8Y0X|1|L5|U|1596
8Y0X|1|L5|G|1597
8Y0X|1|L5|C|1598
8Y0X|1|L5|A|1599
8Y0X|1|L5|A|1600
8Y0X|1|L5|A|1601
8Y0X|1|L5|U|1602

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37