HL_8Y0X_065

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8Y0X|1|L5|A|4214, 8Y0X|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0X_065 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1269

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8Y0X|1|L5|U|4210
8Y0X|1|L5|C|4211
8Y0X|1|L5|A|4212
8Y0X|1|L5|A|4213
8Y0X|1|L5|A|4214
8Y0X|1|L5|C|4215
8Y0X|1|L5|G|4216
8Y0X|1|L5|G|4217
8Y0X|1|L5|U|4218
8Y0X|1|L5|A|4219
8Y0X|1|L5|A|4220
8Y0X|1|L5|C|4221
8Y0X|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29