3D structure

PDB id
8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dormant ribosome with SERBP1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGUUCAUAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8Y0X_071 not in the Motif Atlas
Homologous match to HL_8C3A_062
Geometric discrepancy: 0.147
The information below is about HL_8C3A_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82661.1
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

8Y0X|1|L5|C|4417
8Y0X|1|L5|G|4418
8Y0X|1|L5|U|4419
8Y0X|1|L5|U|4420
8Y0X|1|L5|C|4421
8Y0X|1|L5|A|4422
8Y0X|1|L5|U|4423
8Y0X|1|L5|A|4424
8Y0X|1|L5|G|4425

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CB
Elongation factor 2
Chain LI
60S ribosomal protein L10-like
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:


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