HL_8Y37_018
3D structure
- PDB id
- 8Y37 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- UUUUGUAGAA
- Length
- 10 nucleotides
- Bulged bases
- 8Y37|1|A|A|617
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y37_018 not in the Motif Atlas
- Geometric match to HL_4WF9_018
- Geometric discrepancy: 0.0702
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 137
Unit IDs
8Y37|1|A|U|609
8Y37|1|A|U|610
8Y37|1|A|U|611
8Y37|1|A|U|612
8Y37|1|A|G|613
8Y37|1|A|U|614
8Y37|1|A|A|615
8Y37|1|A|G|616
8Y37|1|A|A|617
8Y37|1|A|A|618
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain J
- Large ribosomal subunit protein uL15
- Chain O
- Large ribosomal subunit protein bL20
- Chain P
- Large ribosomal subunit protein bL21
- Chain Z
- Large ribosomal subunit protein bL32
Coloring options: