HL_8Y39_005
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAAUACAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y39_005 not in the Motif Atlas
- Homologous match to HL_5J7L_138
- Geometric discrepancy: 0.2206
- The information below is about HL_5J7L_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68257.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8Y39|1|A|U|159
8Y39|1|A|G|160
8Y39|1|A|A|161
8Y39|1|A|A|162
8Y39|1|A|U|163
8Y39|1|A|A|164
8Y39|1|A|C|165
8Y39|1|A|A|166
8Y39|1|A|U|167
8Y39|1|A|A|168
8Y39|1|A|G|169
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain V
- Large ribosomal subunit protein bL28
Coloring options: