HL_8Y39_083

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_083 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3641

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8Y39|1|a|A|470
8Y39|1|a|A|471
8Y39|1|a|G|472
8Y39|1|a|U|473
8Y39|1|a|A|474
8Y39|1|a|A|475
8Y39|1|a|C|476
8Y39|1|a|U|477
8Y39|1|a|G|478
8Y39|1|a|U|479

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16