HL_8Y39_086

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_086 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.1

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8Y39|1|a|C|697
8Y39|1|a|G|698
8Y39|1|a|G|699
8Y39|1|a|U|700
8Y39|1|a|G|701
8Y39|1|a|A|702
8Y39|1|a|A|703
8Y39|1|a|A|704
8Y39|1|a|U|705
8Y39|1|a|G|706

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

Small ribosomal subunit protein uS7

Chain k

Small ribosomal subunit protein uS11