HL_8Y39_103

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

8Y39|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y39_103 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1965

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8Y39|1|A|G|428
8Y39|1|A|C|429
8Y39|1|A|A|430
8Y39|1|A|C|431
8Y39|1|A|G|432
8Y39|1|A|U|433
8Y39|1|A|G|434
8Y39|1|A|A|435
8Y39|1|A|A|436
8Y39|1|A|A|437
8Y39|1|A|U|438

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein bL28