HL_8Y5K_051

3D structure

PDB id

8Y5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8Y5K|1|1|G|2250

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5K_051 not in the Motif Atlas

Geometric match to HL_4V9F_055

Geometric discrepancy: 0.1315

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8Y5K|1|1|C|2248
8Y5K|1|1|U|2249
8Y5K|1|1|G|2250
8Y5K|1|1|G|2251
8Y5K|1|1|G|2252
8Y5K|1|1|G|2253
8Y5K|1|1|C|2254
8Y5K|1|1|G|2255
8Y5K|1|1|G|2256

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27