HL_8Y5K_104

3D structure

PDB id

8Y5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-A state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8Y5K|1|6|G|18, 8Y5K|1|6|G|19, 8Y5K|1|6|U|20, 8Y5K|1|6|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5K_104 not in the Motif Atlas

Geometric match to HL_1J1U_001

Geometric discrepancy: 0.2974

The information below is about HL_1J1U_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_63054.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8Y5K|1|6|C|13
8Y5K|1|6|A|14
8Y5K|1|6|G|15
8Y5K|1|6|C|16
8Y5K|1|6|C|17
8Y5K|1|6|U|17|||A
8Y5K|1|6|G|18
8Y5K|1|6|G|19
8Y5K|1|6|U|20
8Y5K|1|6|A|21
8Y5K|1|6|G|22

Current chains

Chain 6

tRNA(fMet)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA