HL_8Y5P_009

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8Y5P|1|1|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_009 not in the Motif Atlas

Geometric match to HL_7A0S_010

Geometric discrepancy: 0.211

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

8Y5P|1|1|C|305
8Y5P|1|1|U|306
8Y5P|1|1|G|307
8Y5P|1|1|G|308
8Y5P|1|1|A|309
8Y5P|1|1|A|310
8Y5P|1|1|A|311
8Y5P|1|1|G|312

Current chains

Chain 1

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L24