HL_8Y5P_010

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8Y5P|1|1|G|329, 8Y5P|1|1|A|330, 8Y5P|1|1|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_010 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1247

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8Y5P|1|1|G|327
8Y5P|1|1|U|328
8Y5P|1|1|G|329
8Y5P|1|1|A|330
8Y5P|1|1|C|331
8Y5P|1|1|A|332
8Y5P|1|1|G|333
8Y5P|1|1|C|334
8Y5P|1|1|C|335

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24