HL_8Y5P_019

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

8Y5P|1|1|U|646

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_019 not in the Motif Atlas

Geometric match to HL_1U9S_001

Geometric discrepancy: 0.3135

The information below is about HL_1U9S_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8Y5P|1|1|U|641
8Y5P|1|1|U|642
8Y5P|1|1|A|643
8Y5P|1|1|A|644
8Y5P|1|1|C|645
8Y5P|1|1|U|646
8Y5P|1|1|G|647

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35