HL_8Y5P_039

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8Y5P|1|1|A|1616, 8Y5P|1|1|A|1618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_039 not in the Motif Atlas

Geometric match to HL_9DFE_038

Geometric discrepancy: 0.1313

The information below is about HL_9DFE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8Y5P|1|1|C|1612
8Y5P|1|1|G|1613
8Y5P|1|1|A|1614
8Y5P|1|1|C|1615
8Y5P|1|1|A|1616
8Y5P|1|1|C|1617
8Y5P|1|1|A|1618
8Y5P|1|1|G|1619

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain s

50S ribosomal protein L22