HL_8Y5P_073

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_073 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.273

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8Y5P|1|3|U|157
8Y5P|1|3|G|158
8Y5P|1|3|G|159
8Y5P|1|3|A|160
8Y5P|1|3|A|161
8Y5P|1|3|A|162
8Y5P|1|3|C|163
8Y5P|1|3|G|164

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 0

Elongation factor G

Chain Y

30S ribosomal protein S20

Chain p

50S ribosomal protein L19