HL_8Y5P_102

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8Y5P|1|6|C|16, 8Y5P|1|6|C|17, 8Y5P|1|6|U|17|||A, 8Y5P|1|6|G|18, 8Y5P|1|6|G|19, 8Y5P|1|6|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5P_102 not in the Motif Atlas

Geometric match to HL_7LYF_001

Geometric discrepancy: 0.1763

The information below is about HL_7LYF_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8Y5P|1|6|C|13
8Y5P|1|6|A|14
8Y5P|1|6|G|15
8Y5P|1|6|C|16
8Y5P|1|6|C|17
8Y5P|1|6|U|17|||A
8Y5P|1|6|G|18
8Y5P|1|6|G|19
8Y5P|1|6|U|20
8Y5P|1|6|A|21
8Y5P|1|6|G|22

Current chains

Chain 6

tRNA(fMet)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA