HL_8Y5R_007

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

8Y5R|1|1|C|228

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5R_007 not in the Motif Atlas

Geometric match to HL_5J7L_140

Geometric discrepancy: 0.2465

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

8Y5R|1|1|C|225
8Y5R|1|1|A|226
8Y5R|1|1|A|227
8Y5R|1|1|C|228
8Y5R|1|1|C|229
8Y5R|1|1|G|230

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15