HL_8Y5S_035
3D structure
- PDB id
- 8Y5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CGACGGUUG
- Length
- 9 nucleotides
- Bulged bases
- 8Y5S|1|1|G|1452, 8Y5S|1|1|A|1453, 8Y5S|1|1|C|1454
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y5S_035 not in the Motif Atlas
- Geometric match to HL_5J7L_169
- Geometric discrepancy: 0.2124
- The information below is about HL_5J7L_169
- Detailed Annotation
- Mini UNCG with extended bulge
- Broad Annotation
- Mini UNCG with extended bulge
- Motif group
- HL_22622.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8Y5S|1|1|C|1451
8Y5S|1|1|G|1452
8Y5S|1|1|A|1453
8Y5S|1|1|C|1454
8Y5S|1|1|G|1455
8Y5S|1|1|G|1456
8Y5S|1|1|U|1457
8Y5S|1|1|U|1458
8Y5S|1|1|G|1459
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain n
- 50S ribosomal protein L17
Coloring options: