HL_8Y5S_065

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8Y5S|1|1|G|2751, 8Y5S|1|1|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5S_065 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.0894

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8Y5S|1|1|C|2745
8Y5S|1|1|U|2746
8Y5S|1|1|G|2747
8Y5S|1|1|A|2748
8Y5S|1|1|A|2749
8Y5S|1|1|A|2750
8Y5S|1|1|G|2751
8Y5S|1|1|C|2752
8Y5S|1|1|A|2753
8Y5S|1|1|U|2754
8Y5S|1|1|C|2755
8Y5S|1|1|U|2756
8Y5S|1|1|A|2757
8Y5S|1|1|A|2758
8Y5S|1|1|G|2759

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13