HL_8YDE_066

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8YDE|1|1|U|2797, 8YDE|1|1|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDE_066 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.2761

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8YDE|1|1|C|2795
8YDE|1|1|U|2796
8YDE|1|1|U|2797
8YDE|1|1|U|2798
8YDE|1|1|A|2799
8YDE|1|1|A|2800
8YDE|1|1|G|2801

Current chains

Chain 1

23S rRNA

Nearby chains