HL_8YDF_088
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8YDF|1|3|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDF_088 not in the Motif Atlas
- Geometric match to HL_4LFB_017
- Geometric discrepancy: 0.1124
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8YDF|1|3|G|786
8YDF|1|3|A|787
8YDF|1|3|U|788
8YDF|1|3|U|789
8YDF|1|3|A|790
8YDF|1|3|G|791
8YDF|1|3|A|792
8YDF|1|3|U|793
8YDF|1|3|A|794
8YDF|1|3|C|795
8YDF|1|3|C|796
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- mRNA
- Chain 6
- Transfer RNA; tRNA
- Chain 7
- Transfer RNA; tRNA
- Chain P
- 30S ribosomal protein S11
- Chain Z
- 30S ribosomal protein S21
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