HL_8YDG_005

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDG_005 not in the Motif Atlas

Geometric match to HL_8B0X_037

Geometric discrepancy: 0.205

The information below is about HL_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50765.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8YDG|1|1|U|158
8YDG|1|1|G|159
8YDG|1|1|A|160
8YDG|1|1|A|161
8YDG|1|1|U|162
8YDG|1|1|C|163
8YDG|1|1|C|164
8YDG|1|1|A|165
8YDG|1|1|U|166
8YDG|1|1|A|167
8YDG|1|1|G|168

Current chains

Chain 1

23S rRNA

Nearby chains

Chain x

50S ribosomal protein L28