HL_8YDG_023

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

8YDG|1|1|U|827, 8YDG|1|1|G|830

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDG_023 not in the Motif Atlas

Geometric match to HL_8B0X_055

Geometric discrepancy: 0.2414

The information below is about HL_8B0X_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

8YDG|1|1|U|826
8YDG|1|1|U|827
8YDG|1|1|U|828
8YDG|1|1|A|829
8YDG|1|1|G|830
8YDG|1|1|G|831

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15