HL_8YDG_068

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

8YDG|1|1|C|2858

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDG_068 not in the Motif Atlas

Geometric match to HL_9AXU_017

Geometric discrepancy: 0.1826

The information below is about HL_9AXU_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8YDG|1|1|A|2856
8YDG|1|1|G|2857
8YDG|1|1|C|2858
8YDG|1|1|G|2859
8YDG|1|1|A|2860
8YDG|1|1|U|2861

Current chains

Chain 1

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L19