HL_8YDG_076
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GGUAACGGC
- Length
- 9 nucleotides
- Bulged bases
- 8YDG|1|3|G|266
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDG_076 not in the Motif Atlas
- Geometric match to HL_8B0X_005
- Geometric discrepancy: 0.3966
- The information below is about HL_8B0X_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8YDG|1|3|G|259
8YDG|1|3|G|260
8YDG|1|3|U|261
8YDG|1|3|A|262
8YDG|1|3|A|263
8YDG|1|3|C|264
8YDG|1|3|G|265
8YDG|1|3|G|266
8YDG|1|3|C|267
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain V
- 30S ribosomal protein S17
- Chain Y
- 30S ribosomal protein S20
Coloring options: