HL_8YDH_010

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8YDH|1|1|G|329, 8YDH|1|1|A|330, 8YDH|1|1|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDH_010 not in the Motif Atlas

Geometric match to HL_9E6Q_012

Geometric discrepancy: 0.0924

The information below is about HL_9E6Q_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

8YDH|1|1|G|327
8YDH|1|1|U|328
8YDH|1|1|G|329
8YDH|1|1|A|330
8YDH|1|1|C|331
8YDH|1|1|A|332
8YDH|1|1|G|333
8YDH|1|1|C|334
8YDH|1|1|C|335

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24