HL_8YDH_011

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8YDH|1|1|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDH_011 not in the Motif Atlas

Geometric match to HL_8B0X_044

Geometric discrepancy: 0.1607

The information below is about HL_8B0X_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8YDH|1|1|A|382
8YDH|1|1|C|383
8YDH|1|1|A|384
8YDH|1|1|C|385
8YDH|1|1|G|386
8YDH|1|1|U|387
8YDH|1|1|G|388
8YDH|1|1|G|389
8YDH|1|1|U|390
8YDH|1|1|A|391
8YDH|1|1|U|392

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain x

50S ribosomal protein L28