HL_8YDH_035

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8YDH|1|1|G|1452, 8YDH|1|1|A|1453, 8YDH|1|1|C|1454

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YDH_035 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.2197

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8YDH|1|1|C|1451
8YDH|1|1|G|1452
8YDH|1|1|A|1453
8YDH|1|1|C|1454
8YDH|1|1|G|1455
8YDH|1|1|G|1456
8YDH|1|1|U|1457
8YDH|1|1|U|1458
8YDH|1|1|G|1459

Current chains

Chain 1

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17