HL_8YDH_058
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- UGAAUGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8YDH|1|1|A|2406
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YDH_058 not in the Motif Atlas
- Geometric match to HL_8B0X_086
- Geometric discrepancy: 0.1383
- The information below is about HL_8B0X_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_51853.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8YDH|1|1|U|2404
8YDH|1|1|G|2405
8YDH|1|1|A|2406
8YDH|1|1|A|2407
8YDH|1|1|U|2408
8YDH|1|1|G|2409
8YDH|1|1|G|2410
8YDH|1|1|A|2411
8YDH|1|1|A|2412
8YDH|1|1|G|2413
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain l
- 50S ribosomal protein L15
Coloring options: