HL_8YLD_010
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8YLD|1|2|C|402, 8YLD|1|2|G|403
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_010 not in the Motif Atlas
- Homologous match to HL_8C3A_201
- Geometric discrepancy: 0.1687
- The information below is about HL_8C3A_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YLD|1|2|C|393
8YLD|1|2|C|394
8YLD|1|2|U|395
8YLD|1|2|G|396
8YLD|1|2|A|397
8YLD|1|2|G|398
8YLD|1|2|A|399
8YLD|1|2|A|400
8YLD|1|2|A|401
8YLD|1|2|C|402
8YLD|1|2|G|403
8YLD|1|2|G|404
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain Sd
- Small ribosomal subunit protein eS24A
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