HL_8YLD_016

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8YLD|1|2|G|765, 8YLD|1|2|U|767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_016 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.2076

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8YLD|1|2|U|764
8YLD|1|2|G|765
8YLD|1|2|U|766
8YLD|1|2|U|767
8YLD|1|2|C|768
8YLD|1|2|A|769
8YLD|1|2|A|770
8YLD|1|2|A|771
8YLD|1|2|G|772

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SW

Small ribosomal subunit protein uS4A

Chain Sd

Small ribosomal subunit protein eS24A