HL_8YLD_055
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8YLD|1|A|U|879, 8YLD|1|A|A|883, 8YLD|1|A|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_055 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.1277
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8YLD|1|A|A|876
8YLD|1|A|C|877
8YLD|1|A|G|878
8YLD|1|A|U|879
8YLD|1|A|G|880
8YLD|1|A|C|881
8YLD|1|A|A|882
8YLD|1|A|A|883
8YLD|1|A|A|884
8YLD|1|A|U|885
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain R
- Large ribosomal subunit protein uL22A
- Chain l
- Large ribosomal subunit protein eL37A
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