HL_8YLD_056

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8YLD|1|A|A|913, 8YLD|1|A|A|914, 8YLD|1|A|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_056 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1884

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8YLD|1|A|G|910
8YLD|1|A|C|911
8YLD|1|A|G|912
8YLD|1|A|A|913
8YLD|1|A|A|914
8YLD|1|A|A|915
8YLD|1|A|G|916
8YLD|1|A|A|917
8YLD|1|A|C|918

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2A

Chain P

Large ribosomal subunit protein eL15A

Chain l

Large ribosomal subunit protein eL37A