HL_8YLD_082
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 8YLD|1|A|A|2255, 8YLD|1|A|A|2256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLD_082 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.5216
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8YLD|1|A|G|2253
8YLD|1|A|U|2254
8YLD|1|A|A|2255
8YLD|1|A|A|2256
8YLD|1|A|C|2257
8YLD|1|A|U|2258
8YLD|1|A|A|2259
8YLD|1|A|U|2260
8YLD|1|A|G|2261
8YLD|1|A|A|2262
8YLD|1|A|C|2263
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain s
- Transfer RNA; tRNA
Coloring options: