HL_8YLD_083

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8YLD|1|A|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLD_083 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1313

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8YLD|1|A|U|2292
8YLD|1|A|C|2293
8YLD|1|A|U|2294
8YLD|1|A|A|2295
8YLD|1|A|A|2296
8YLD|1|A|U|2297
8YLD|1|A|U|2298
8YLD|1|A|A|2299
8YLD|1|A|G|2300

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain X

Large ribosomal subunit protein uL14A