HL_8YLR_014

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_014 not in the Motif Atlas

Homologous match to HL_8P9A_203

Geometric discrepancy: 0.2781

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8YLR|1|2|A|520
8YLR|1|2|A|521
8YLR|1|2|U|522
8YLR|1|2|G|523
8YLR|1|2|U|524
8YLR|1|2|A|525
8YLR|1|2|A|526
8YLR|1|2|A|527
8YLR|1|2|U|528
8YLR|1|2|A|529
8YLR|1|2|C|530
8YLR|1|2|C|531
8YLR|1|2|U|532

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sd

Small ribosomal subunit protein eS24A