HL_8YLR_015

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

8YLR|1|2|G|571

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_015 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.1485

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8YLR|1|2|C|569
8YLR|1|2|A|570
8YLR|1|2|G|571
8YLR|1|2|C|572
8YLR|1|2|C|573
8YLR|1|2|G|574

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Sc

Small ribosomal subunit protein uS12A

Chain Sg

Small ribosomal subunit protein eS30A