HL_8YLR_040

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8YLR|1|A|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_040 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.1366

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

8YLR|1|A|U|194
8YLR|1|A|U|195
8YLR|1|A|G|196
8YLR|1|A|G|197
8YLR|1|A|A|198
8YLR|1|A|A|199
8YLR|1|A|C|200
8YLR|1|A|A|201

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4A

Chain a

Large ribosomal subunit protein uL24A

Chain g

Large ribosomal subunit protein eL32